Function reference • WES

Data Standards

template_WES_data: Template environmental sampling data

template_WES_standard_curve: Template standard curve data

Derivative Quantities

apply_amplification_efficiency(): Apply PCR amplification efficiency estimation to a data.frame

est_amplification_efficiency(): Estimate PCR amplification efficiency

apply_delta_delta_ct(): Apply the delta delta Ct calculation to a data.frame

calc_delta_delta_ct(): Calculate delta delta Ct

calc_n_copies(): Calculate number of target copies

Metadata

get_admin_data(): Get administrative data for a set of points

get_elevation_data(): Get elevation data

get_esi_data(): Get Evaporative Stress Index (ESI) data

get_geoboundaries_api_data(): Request metadata from GeoBoundaries API

get_hydro_data(): Get hydrological data

get_population_catchment(): Get population counts within catchments of sampling sites

get_population_radius(): Get population counts within a radius of sampling sites

get_precip_data(): Get precipitation data

get_river_discharge_data(): Get river discharge data

get_temp_data(): Get temperature data

Analytics

calc_sample_sizes(): Calculate sample sizes

Utilities

coords_to_iso3(): Convert coordinates to ISO country code

download_admin_data(): Download administrative boundaries from geoBoundaries API

download_elevation_data(): Download DEM from AWS Terrain Tiles

download_worldpop_data(): Download WorldPop population raster data